Publicación: Caracterización genotípica y fenotípica de cepas emergentes de Escherichia coli aisladas de niños con diarrea en Bucaramanga y su área metropolitana, Colombia.
Caracterización genotípica y fenotípica de cepas emergentes de Escherichia coli aisladas de niños con diarrea en Bucaramanga y su área metropolitana, Colombia.
dc.contributor.author | Arias Guerrero, Monica Y. | spa |
dc.contributor.corporatename | Gómez Duarte, Oscar Gilberto | spa |
dc.contributor.corporatename | Farfán García, Ana Elvira | spa |
dc.date.accessioned | 2018-11-22T19:50:29Z | spa |
dc.date.available | 2018-11-22T19:50:29Z | spa |
dc.date.issued | 2016-10-21 | spa |
dc.description | 128 p. Cd | spa |
dc.description.abstract | Acute diarrheal disease (ADD) remains a major public health problems in developing countries. Among the infectious agents that cause this disease are bacteria, viruses and parasites. Bacterial agents take second place enteropathogenic Escherichia coli standing out among the most important. Currently, six strains with different pathogenic mechanisms are associated with diarrhea enteropathogenic E. coli (EPEC), shiga-toxin producing (STEC), enterotoxigenic (ETEC), enteroinvasive (EIEC), Enteroaggregative (EAEC) and diffusely adherent (DAEC), each with a specific set of virulence genes. However, there have been outbreaks of ADD caused by E. coli strains different from the known pathotypes, called emerging strains. These outbreaks have been reported in Germany, Europe, Argentina and recently in Cartagena, Colombia, suggesting that these strains circulating our environment, so it is necessary to characterize these emerging strains. Objective: To characterize genotypically and phenotypically two emerging strains of E. coli isolated from diarrheal samples in children under five in Bucaramanga and its metropolitan area, Colombia. Methods: A descriptive study was conducted at the genetic and phenotypic two emerging strains previously isolated from a case-control study conducted between July 2013 and December 2014 in Bucaramanga and its metropolitan area. In this study, two emerging strains were characterized by phenotypic and genotypic different methods like MLST analysis, virulence gene sequencing, serotyping, biofilm formation, actin polymerization, adhesion tests and antimicrobial susceptibility. Results: genotypically and phenotypically characterized two emerging strains of E. coli mixed genotype. The first one enteropathogenic E coli enteroaggregative-mixed based on its genotype and phenotype of adhesion assays in HeLa cells and the second a strain of enterotoxigenic E. coli enteroaggregative-mixed based on its genotype and expression of LT. Keywords: Diarrhea, Escherichia coli, pathotypes, emerging, Colombia. | eng |
dc.description.abstract | La enfermedad diarreica aguda (EDA) sigue siendo uno de los principales problemás en salud pública en países en desarrollo. Dentro de los agentes infecciosos que causan esta enfermedad se encuentran bacterias, virus y parásitos. Los agentes bacterianos ocupan un segundo lugar destacándose Escherichia coli enteropatógena entre las más importantes. Actualmente, seis cepas con diferentes mecanismos de patogenicidad están asociados a diarrea E. coli enteropatógena (EPEC), productora de toxina-shiga (STEC), enterotoxigénica (ETEC), enteroinvasiva (EIEC), enteroagregativa (EAEC) y adherente difusa (DAEC), cada una con un set específico de genes de virulencia. No obstante, se han reportado brotes de EDA ocasionados por cepas de E. coli diferentes a los patotipos conocidos, denominadas cepas emergentes. Estos brotes han sido reportados en Alemania, Europa, Argentina y recientemente en Cartagena, Colombia, lo que sugiere que en nuestro medio circulan estas cepas, por lo que se hace necesario caracterizar estas cepas emergentes. Objetivo: Caracterizar genotípicamente y fenotípicamente dos cepas emergentes de E. coli aisladas de muestras diarreicas en niños menores de cinco años en Bucaramanga y su área metropolitana, Colombia. Métodos: Se realizó un estudio descriptivo a nivel genético y fenotípico de dos cepas emergentes previamente aisladas de un estudio de casos y controles realizado entre julio del 2013 y diciembre del 2014 en Bucaramanga y su área metropolitana. En este estudio, dos cepas emergentes fueron caracterizadas fenotípica y genotípicamente mediante diferentes métodos como análisis de MLST, secuenciación de genes de virulencia, serotipificación, formación de biofilm, polimerización de actina, ensayos de adhesión y susceptibilidad antimicrobiana. Resultados: Se caracterizaron genotípicamente y fenotípicamente dos cepas emergentes con genotipo mixto de E. coli. La primera una E coli enteroagregativa-enteropatogena con base en su genotipo mixto y el fenotipo de ensayos de adherencia en células HeLa y la segunda una cepa de E. coli enteroagregativa-enterotoxigenica con base en su genotipo mixto y la expresión de LT. Palabras claves: Diarrea, Escherichia coli, patotipos, emergentes, Colombia. | spa |
dc.description.degreelevel | Maestría | spa |
dc.description.degreename | Magister en Investigación en enfermedades Infecciosas | spa |
dc.description.tableofcontents | TABLA DE CONTENIDO INTRODUCCIÓN……………………………………………………………... 15 1. MARCO TEÓRICO……………………………………………………………… 18 1.1. Enfermedad Diarreica Aguda (EDA)……………………………... 18 1.2. Escherichia coli………………………………………………………….. 18 1.3. Patotipos de E. coli………………………………………………………. 21 1.3.1. E. coli enterotoxigénica (ETEC)………………………………... 21 1.3.1.1. Mecanismo de acción……………………………………….22 1.3.1.2. Epidemiología……………………………………………… 23 1.3.2. E. coli enteropatógena (EPEC)…………………………………. 23 1.3.2.1. Factores de virulencia……………………………………… 24 1.3.2.2. Mecanismo de acción……………………………………….25 1.3.2.3. Epidemiología……………………………………………… 29 1.3.3. Escherichia coli enteroagregativa (EAEC)……………………... 30 1.3.3.1. Factores de virulencia……………………………………… 30 1.3.3.2. Mecanismos de acción……………………………………... 31 1.3.3.3. Epidemiología……………………………………………… 33 1.3.4. Escherichia coli productora de toxina Shiga (STEC)…………... 33 1.3.4.1. Factores de virulencia……………………………………… 34 1.3.4.2. Mecanismo de patogenicidad……………………………….35 1.3.4.3. Epidemiología……………………………………………… 37 1.3.5. Escherichia coli enteroinvasiva (EIEC)………………………… 38 1.3.5.1. Factores de virulencia……………………………………… 38 1.3.5.2. Mecanismo de acción……………………………………….39 1.3.5.3. Epidemiología……………………………………………… 41 1.3.6. Escherichia coli de adherencia difusa (DAEC)………………… 41 1.3.6.1. Mecanismo de acción……………………………………… 42 1.3.6.2. Epidemiología……………………………………………… 43 1.4. Escherichia coli emergente……………………………………….. 43 1.5. Marcadores diagnósticos…………………………………………...45 1.5.1. Marcadores genotípicos………………………………………… 45 1.5.1.1. Reacción en cadena de la polimerasa (PCR)………………. 45 1.5.1.2. Polimorfismos de longitud de fragmentos de restricción (RFLP)…...........45 1.5.1.3. Análisis de Enzimás de restricción (REA)………………… 46 1.5.1.4. Multilocus sequence typing (MLST)………………………. 46 1.5.2. Marcadores fenotípicos…………………………………………. 47 1.5.2.1. Serotipado………………………………………………….. 47 1.5.2.2. Ensayos de adhesión celular……………………………….. 47 1.5.2.3. Formación de biopelículas…………………………………. 48 1.5.2.4. Susceptibilidad antimicrobiana…………………………….. 48 1.5.2.5. FAS (Tinción fluorescente para actina)……………………. 49 2. OBJETIVOS……………………………………………………………... 50 2.1. OBJETIVO GENERAL…………………………………………… 50 2.2. OBJETIVOS ESPECÍFICOS…………………………...………… 50 3. MATERIALES Y MÉTODOS………………………………………..…. 51 3.1. Tipo de estudio……………………………………………………. 51 3.2. Área geográfica……………………………………………………. 51 3.3. Universo…………………………………………………………… 51 3.4. Población………………………………………………………….. 51 3.5. Muestra biológica…………………………………………………. 51 3.6. Procedimientos……………………………………………………. 51 3.6.1. Caracterización genotípica de cepas emergentes de E. coli…... 52 3.6.1.1. Extracción de material genómico………………………….. 52 3.6.1.2. PCR multiplex……………………………………………... 53 3.6.1.3. Ensayo de estabilidad genética…………………………… 54 3.6.1.5. Identificación del gen uidA………………………………. 54 3.6.1.6. PCR convencional para la identificación de genes específicos de cada uno de los patotipos de las cepas emergentes………………………………………………………. 55 3.6.1.6.1. Genes de EPEC………………………………………………………… 55 3.6.1.6.2. Genes de EAEC………………………………………………………… 55 3.6.1.6.3. Genes de ETEC………………………………………………………….56 3.6.1.7. Secuenciación de genes de virulencia……………………… 58 3.6.1.8. Multi- Locus Sequence Typing (MLST)…………………... 59 3.6.1.9. Árbol filogenético del MLST……………………………… 60 3.6.2. Caracterización fenotípica de cepas emergentes de E. coli…… 60 3.6.2.1. Serotipificación……………………………………………. 60 3.6.2.2. Formación de Biofilm……………………………………… 60 3.6.2.3. Ensayos de adhesión……………………………………….. 61 3.6.2.4. Ensayos de Polimerización de Actina……………………… 61 3.6.2.5. Test de susceptibilidad antimicrobiana…………………….. 62 3.6.3. Análisis de datos………………………………………………... 63 4. RESULTADOS………………………………………………………….. 64 4.1. Caracterización de la cepa EAEC-ETEC…………………………. 64 4.1.1. Características clínicas y epidemiológicas de voluntario portador De cepa emergente………64 4.1.2. Caracterización genotípica……………………………………… 64 4.1.2.3. PCR convencional para la identificación de genes característicos de los patotipos…… 65 4.1.2.4. Secuenciación genes de virulencia………………………… 66 4.1.2.5. MLST……………………………………………………… 67 4.1.2.6. Árbol filogenético del MLST……………………………… 67 4.1.3. Caracterización fenotípica……………………………………… 68 4.1.3.1. Serotipificación……………………………………………. 69 4.1.3.2. Formación de Biofilm……………………………………… 69 4.1.3.3. Ensayo de Adhesión……………………………………….. 70 4.1.3.4. Susceptibilidad Antimicrobiana……………………………. 70 4.2. Caracterizacion de la Cepa EAEC-EPEC E2_430………………... 72 4.2.1. Características clínicas y epidemiológicas de voluntario portador de cepa emergente……………………………………………… 72 4.2.2. Caracterización genotípica……………………………………… 72 4.2.2.2. Ensayo de estabilidad genética…………………………….. 73 4.2.2.3. PCR convencional para la identificación de genes característicos de los patotipos…………73 4.2.2.4. Secuenciación de genes de virulencia……………………… 74 4.2.2.5. MLST………………………………………………………. 75 4.2.2.6. Árbol filogenético del MLST……………………………… 75 4.2.3. Caracterización fenotípica………………………………………. 77 4.2.3.1. Serotipificación…………………………………………….. 77 4.2.3.2. Formación de Biofilm……………………………………… 77 4.2.3.3. Ensayo de adhesión………………………………………… 78 4.2.3.4. Ensayo de polimerización de actina………………………...79 4.2.3.5. Susceptibilidad antimicrobiana…………………………….. 81 5. DISCUSIÓN……………………………………………………………... 83 6. CONCLUSIONES……………………………………………………….. 89 7. RECOMENDACIONES…………………………………………………. 90 8. REFERENCIAS…………………………………………………………….. 91 8. ANEXOS…………………………………………………………………...104 | spa |
dc.description.version | Ej. 1 | spa |
dc.format.mimetype | application/pdf | spa |
dc.identifier.local | T 86.16 A741c | spa |
dc.identifier.uri | https://repositorio.udes.edu.co/handle/001/631 | spa |
dc.language.iso | spa | spa |
dc.publisher | Bucaramanga : Universidad de Santander, 2016 | spa |
dc.publisher.faculty | Facultad Ciencias de la Salud | spa |
dc.publisher.program | Maestría en Investigación en enfermedades Infecciosas | spa |
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dc.rights | Derechos Reservados - Universidad de Santander, 2016 | spa |
dc.rights.accessrights | info:eu-repo/semantics/openAccess | spa |
dc.rights.creativecommons | Atribución-NoComercial 4.0 Internacional (CC BY-NC 4.0) | spa |
dc.rights.uri | https://creativecommons.org/licenses/by-nc/4.0/ | spa |
dc.subject.proposal | Diarrea | spa |
dc.subject.proposal | Escherichia coli | spa |
dc.subject.proposal | Patotipos | spa |
dc.subject.proposal | Emergentes | spa |
dc.subject.proposal | Colombia | spa |
dc.title | Caracterización genotípica y fenotípica de cepas emergentes de Escherichia coli aisladas de niños con diarrea en Bucaramanga y su área metropolitana, Colombia. | spa |
dc.type | Trabajo de grado - Maestría | spa |
dc.type.coar | http://purl.org/coar/resource_type/c_bdcc | spa |
dc.type.content | Text | spa |
dc.type.driver | info:eu-repo/semantics/masterThesis | spa |
dc.type.redcol | https://purl.org/redcol/resource_type/TM | spa |
dc.type.version | info:eu-repo/semantics/publishedVersion | spa |
dspace.entity.type | Publication | |
oaire.accessrights | http://purl.org/coar/access_right/c_abf2 | spa |
oaire.version | http://purl.org/coar/version/c_970fb48d4fbd8a85 | spa |
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